The most accurate and repeatable way of doing this is to secure the bleed in a fixture such as an old metering block, purpose built index block, or even a tube with threaded ends for fixturing. Drill on a mill, to within .005 of the final ID and ream to within .0005, debur, and wet flow check. After a production run, all flow matched sets are labeled and sorted. If needed the entry radius is cut to change the flow numbers and again, matched sets are sorted. This is how the top tier professionals are doing it manually, if they havent incorperated CNC yet to hold toleraces of .0002, even then, the parts must be flow checked as tool wear will have to be compensated for.
Coming from Holley and the like, their QC isnt as good so one set is with a range and another set is also in a range and the two ranges can overlap. That means you buy a set of bleeds or jets and if you go one number, there a chance you haven't actually changed flow characteristics at all. It important to stick to the brand name of the builder when experimenting because how they do things effects how you do things.