The "problem" with the rear end is the way it attaches under the car. On a "torque tube" axle, the driveshaft is inside a pipe (the torque tube) that is solidly attached to the front of the rear axle. The axle housing is made specifically for the tube to bolt to. The other end attaches to the transmission. The transmission has a special flange on the output shaft housing for the flexible flange end of the tube to bolt to. The tube then holds the axle in place -- or rather is the main thing holding the axle in place. There is a panhard rod to prevent sideways movement, and the shocks keep the coil springs from falling out (keep the rear axles from dropping far enough for the springs to fall out).
When you change the transmission, you lose the front mounting point for the tube. Ladder bars aren't hard to install, you just need to bolt or weld in a crossmember for them to bolt to. The same thing with the Hot Rods to Hell "truckarm" kit.
I'd go with the truckarm kit if possible. Ladder bars are a bit cheaper, but the truckarm setup will ride and handle much better. The G-body kit (
http://www.hotrodstohell.net/truckarm/truckarm_gbody/truckarm_gbody.htm) wouldn't be hard to modify to fit the Rambler, any shop could do it, or anyone with a little welding skills. You'll need a custom driveshaft also, but that's easy and under $200 in most areas.
The G-body axle would probably fit, but it has a different wheel bolt pattern than the Rambler. I'd get a late 90s Ford Explorer axle with disc brakes, killing two birds with one stone. It has the same wheel bolt pattern as the Rambler. Just remove the spring seats off the Rambler axle and put them on the donor axle. All that takes is drilling and tapping two 3/8" fine thread holes in the right places.
www.scarebird.com has an AMC front disc brake kit. I think they have it listed for 68-70 Javelin, but it fits all AMCs. The kit is just a bracket and seal spacer, plus a parts list of common parts you need (GM calipers, Ford Ranger rotors) to pick up from local parts stores. Total cost to convert to disc using new parts is right at $400, including the Scarebird kit.
In this car it takes as much work to put a late model AMC engine in as it does anything else. The only easy bolt-in would be a 63-66 AMC V-8, either the old 287 or 327. Those are hard to come by, and you'd need the entire drivetrain (engine/trans/torque tube/axle) as well as the mounting parts. Not a bad engine, but no speed parts. You'd have to locate a donor car for all the parts then likely rebuild the engine and trans. It can be hard to find someone who know enough about the old Borg Warner auto trans to rebuild it correctly. Of course the stick shift is easy enough to work with, but do you want a three speed stick? Four speeds were available only in 66, and they are rare!
So stick what you can find and are comfortable with in it. Mounting won't be hard. I'd stick a modern EFI V-8 in it, leaving it stock. An LT-1 or Ford 351 from a truck would be nice. Better yet, use a Chrysler/Jeep 4.7L V-8 from a Grand Cherokee or Dodge truck. That engine is a development of the last AMC V-8 along with a bit of Chrysler influence. There are some aspects of both in it, but except for the OHC heads it resembles the AMC V-8 most. Not only that, 4.7L is 287 cubic inches, same as the old Rambler Classic V-8 made from late 63-66. Get some original Rambler 287 badges for it! Not a lot of call for those engines, should be reasonably priced in salvage yards.