Yes. The relay is only going to be on when the 86 trigger is on. So placing a fuse before the relay makes sense because the circuit is only completed when that trigger is on. This also allows for relays to be placed closer to the power sucker and the fuses to be placed in a group further towards your power post..
When you have a rear mounted battery you want to have a power(and ground) post under the hood.
You run your alternatiors sensing (S) wire to this post so that when you say turn on your headlights that alternatior will "sense" the drop and increase voltage faster then if it would if it had to go all the way back to the battery.
Ok now the point of relays is to reduce voltage drops through wiring. So you want to place them as close to the power suckers az possible..
I would run a 0000 off the battery up to the starter. Then have 4 from the starter up my firewall to my power post. Then 4 going to the alternatior and another 4 going to a mini 8 fuse pannel by the back of the headlight. These 8 fuses would then feed my front clip relays.
The power post would then have a 4 gauge going to a interior 16 or so fuse panel to power the rest of the car.
The alternatior sense wire would go to that power post.
I would also spend the coin to run a 0000 negative wire from the battery to the block then have 4 gauge running off of that to ground everything properly.
In the trunk I would have a 4 gauge going to a 8 fuse panel powering relays for my tail,turn,backup lights, fuel pump, and future stuff.
If say your fuel pump fuse goes you walk back to the trunk and check easily. If your fan fuse goes out you throw up the hood. If your radio goes out you look in the glovebox/center council.